Delicate, tangy, and blissfully sweet, these Irresistible Blueberry Lime Cheesecake Cupcakes are the very definition of a crowd-pleasing dessert. With a buttery vanilla base layered with vibrant blueberry compote, topped with a zingy lime cheesecake swirl, each bite is like a mini tropical getaway. Perfect for spring and summer events, these cupcakes shine with their unique color and flavor contrast—purple and green never looked or tasted so good together.

The fresh lime zest cuts through the richness of the cheesecake, balancing perfectly with the natural sweetness of blueberries. Baked into a tender, muffin-style cupcake and finished with a creamy, fruity topping, they’re ideal for bridal showers, baby showers, picnics, or a fun twist on your usual bake sale favorites. These little treats don’t just taste great—they’re also visually stunning.
Ingredients for this Irresistible Blueberry Lime Cheesecake Cupcakes Recipe
For the cupcake base:
- 1 1/4 cups all-purpose flour
- 1/2 tsp baking powder
- 1/4 tsp baking soda
- 1/4 tsp salt
- 1/2 cup unsalted butter, room temperature
- 3/4 cup granulated sugar
- 2 large eggs
- 1 tsp vanilla extract
- 1/2 cup sour cream
- 1/2 cup fresh blueberries
For the cheesecake topping:
- 8 oz cream cheese, softened
- 1/4 cup granulated sugar
- 1 tsp vanilla extract
- Zest of 1 lime
- 1 tbsp fresh lime juice
- 1 large egg
For the blueberry-lime compote:
- 1 cup fresh or frozen blueberries
- 2 tbsp sugar
- 1 tsp lime juice
- 1 tsp cornstarch mixed with 1 tbsp water
Optional Garnish:
- Extra fresh blueberries
- Candied lime zest or small lime wedges

Step 1: Prepare the Blueberry Compote
In a small saucepan over medium heat, combine the blueberries, sugar, and lime juice. Stir frequently as the mixture begins to bubble. Once the berries start to break down, add the cornstarch slurry and stir until thickened, about 1-2 minutes. Remove from heat and let cool completely.
Step 2: Make the Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners. In a medium bowl, whisk together flour, baking powder, baking soda, and salt. In a separate large bowl, cream butter and sugar together until light and fluffy. Add eggs one at a time, beating well after each. Mix in vanilla extract and sour cream until smooth. Gradually incorporate the dry ingredients. Gently fold in the blueberries.
Step 3: Fill and Layer
Spoon the cupcake batter into the lined muffin cups, filling each about 2/3 full. Use a small spoon to make a shallow indent in the center of each batter-filled cup and drop a small spoonful of cooled blueberry compote into each.
Step 4: Prepare Cheesecake Topping
In a clean bowl, beat the cream cheese and sugar until smooth. Add the vanilla, lime zest, lime juice, and egg, mixing until fully combined and creamy. Spoon a tablespoon of the cheesecake mixture over each cupcake, spreading gently to cover the berry center.
Step 5: Bake
Bake in the preheated oven for 20-25 minutes, or until the cheesecake tops are set and slightly golden. Allow cupcakes to cool in the pan for 10 minutes before transferring to a wire rack to cool completely.
Step 6: Garnish and Serve
Once cooled, top each cupcake with a few fresh blueberries and a garnish of candied lime zest or a small lime wedge. Chill slightly before serving for best texture and flavor.
Frequently Asked Questions
What makes these cupcakes different from regular cheesecake?
These are hybrid cupcakes with a fluffy vanilla base and a creamy cheesecake topping, blending two beloved textures in one bite-sized treat.
Can I use bottled lime juice instead of fresh?
While bottled lime juice works in a pinch, fresh lime juice offers a brighter, more vibrant flavor that pairs beautifully with the blueberries.
Can I substitute the blueberries with another fruit?
Yes, raspberries or blackberries make excellent substitutes. Adjust the sugar in the compote based on the tartness of the fruit.
How do I prevent my cheesecake layer from cracking?
Avoid overmixing the cheesecake batter and do not overbake. Letting the cupcakes cool gradually also helps prevent cracks.
Can I make these ahead for a party?
Absolutely! These cupcakes store well in the fridge and actually taste better the next day as the flavors meld.
What kind of liners work best?
Use high-quality paper or foil liners. If you’re going for presentation, tulip-style liners add a pretty, professional touch.

Irresistible Blueberry Lime Cheesecake Cupcakes
- Total Time: 50 minutes
- Yield: 12 cupcakes
Description
Bite into tropical bliss with these Irresistible Blueberry Lime Cheesecake Cupcakes! This easy recipe layers a zesty lime cheesecake topping over moist vanilla cupcakes filled with luscious blueberry compote. Perfect for those in search of new breakfast ideas, elegant brunch options, or vibrant dessert recipes, these cupcakes are a dazzling showstopper. The combination of tangy lime and juicy berries gives every bite a refreshing twist, making them a standout for summer potlucks, baby showers, and birthday spreads. Whether you’re exploring quick dessert options or bold food ideas to brighten your table, this easy recipe has you covered.
Ingredients
Cupcake Base:
1 1/4 cups all-purpose flour
1/2 tsp baking powder
1/4 tsp baking soda
1/4 tsp salt
1/2 cup unsalted butter, room temperature
3/4 cup granulated sugar
2 large eggs
1 tsp vanilla extract
1/2 cup sour cream
1/2 cup fresh blueberries
Cheesecake Topping:
8 oz cream cheese, softened
1/4 cup granulated sugar
1 tsp vanilla extract
Zest of 1 lime
1 tbsp fresh lime juice
1 large egg
Blueberry Compote:
1 cup blueberries (fresh or frozen)
2 tbsp sugar
1 tsp lime juice
1 tsp cornstarch mixed with 1 tbsp water
Optional Garnish:
Fresh blueberries
Candied lime zest or lime wedges
Instructions
- Make Compote: Simmer blueberries, sugar, and lime juice in a saucepan. Add cornstarch slurry, stir until thickened, and cool.
- Prep Batter: Preheat oven to 350°F. Mix dry ingredients. Cream butter and sugar, then add eggs, vanilla, and sour cream. Combine with dry mix and fold in blueberries.
- Layer: Fill muffin cups 2/3 full. Add a spoonful of compote in the center.
- Cheesecake Layer: Beat cream cheese with sugar, vanilla, lime zest and juice, and egg. Spoon on top of each cupcake.
- Bake: Bake 20-25 minutes until tops are set. Cool in pan 10 minutes, then transfer to rack.
- Finish: Garnish with fresh blueberries and lime zest. Chill slightly before serving.
- Prep Time: 25 minutes
- Cook Time: 25 minutes
- Category: Dessert