Keto Pumpkin Muffins with Cream Cheese Core

Save this recipe on:

These Keto Pumpkin Muffins with Cream Cheese Core are a cozy, low-carb indulgence that tastes like autumn wrapped in a cupcake liner. With a tender crumb infused with pumpkin spice and a luscious cream cheese center, they’re just the right mix of warmth and tang. Perfect for breakfast, an afternoon treat, or even dessert, these muffins satisfy your pumpkin cravings while keeping carbs in check.

Each bite delivers velvety spiced pumpkin muffin paired with a rich, sweet, and creamy surprise at the center. The bonus? They’re easy to make, freezer-friendly, and naturally gluten-free. Whether you’re following a keto lifestyle or simply craving something less sugary, this recipe delivers all the flavor with none of the guilt.

---

What Kind of Pumpkin Should I Use?

When making keto pumpkin muffins, always use pure pumpkin puree — not pumpkin pie filling. The canned pie mixes often contain added sugars and starches, which can knock the recipe out of keto territory. Look for 100% pumpkin puree with no added ingredients. If you’re using homemade puree, make sure it’s well-drained to avoid excess moisture that can affect the texture.

---

Ingredients for the Keto Pumpkin Muffins with Cream Cheese Core

Pumpkin Puree: This is the base of the flavor profile, bringing in that warm fall essence.

Almond Flour: A keto staple that gives the muffins a moist, tender crumb while keeping them low-carb.

Coconut Flour: Helps absorb moisture and balances the texture with almond flour.

Eggs: Bind everything together and add richness.

Sweetener (like erythritol or monk fruit): Brings sweetness without spiking blood sugar.

Pumpkin Pie Spice: For that unmistakable fall flavor bouquet.

Baking Powder: Provides the lift and fluffiness.

Salt: Enhances all the other flavors.

Vanilla Extract: Rounds out the flavor and complements the pumpkin.

Cream Cheese: The creamy, tangy core that turns this muffin into a dessert-worthy delight.

Butter (melted): Adds richness and moisture to the batter.

---

How To Make the Keto Pumpkin Muffins with Cream Cheese Core

Step 1: Prepare the Cream Cheese Filling

Mix softened cream cheese with a bit of your preferred sweetener and vanilla extract. Blend until smooth, then scoop into small dollops and freeze for 15-20 minutes. This makes them easier to insert into the batter later.

Step 2: Mix the Dry Ingredients

In a large bowl, whisk together almond flour, coconut flour, pumpkin pie spice, baking powder, and salt. Ensure there are no clumps.

Step 3: Combine the Wet Ingredients

In another bowl, mix pumpkin puree, eggs, melted butter, sweetener, and vanilla extract until smooth and creamy.

Step 4: Combine Wet and Dry

Pour the wet mixture into the dry ingredients and stir until just combined. Let the batter rest for a few minutes to allow the coconut flour to absorb moisture.

Step 5: Fill and Assemble

Scoop muffin batter into lined muffin tins, filling each about halfway. Place a frozen cream cheese ball in the center of each muffin, then cover with remaining batter until about 3/4 full.

Step 6: Bake to Perfection

Bake at 350°F (175°C) for 20-25 minutes, or until the tops are set and a toothpick inserted near the edge comes out clean. Allow them to cool before serving so the center sets nicely.

---

Serving and Storing Keto Pumpkin Muffins

These muffins are best enjoyed slightly warm when the cream cheese core is still soft and creamy. Store any leftovers in an airtight container in the fridge for up to 5 days. For longer storage, freeze them individually wrapped, then thaw or reheat as needed. A quick zap in the microwave for 15-20 seconds will bring them back to muffin magic.

---

What to Serve With Keto Pumpkin Muffins with Cream Cheese Core?

Scrambled Eggs with Chives

A savory, protein-packed breakfast partner that balances the sweetness of the muffin.

Keto Hot Chocolate

Warm up your mornings with a cozy mug of low-carb cocoa on the side.

Almond Milk Latte

A frothy, lightly sweetened keto latte goes hand-in-hand with pumpkin spice.

Bacon-Wrapped Asparagus

Perfect for brunch or lunch, offering crunch and savory goodness.

Avocado and Tomato Salad

A light, refreshing side to keep things wholesome and keto-aligned.

Greek Yogurt with Cinnamon

Choose unsweetened Greek yogurt for a tangy, creamy contrast to your muffin.

Cheddar Omelette

Hearty and cheesy, a great balance to the soft, spiced muffin.

---

Want More Muffin Ideas That Surprise and Delight?

If you love these cream cheese-centered pumpkin muffins, don’t stop here! Check out these tasty twists:

• Gooey Cinnamon Cream Cheese Muffins
• Chocolate Cherry Cream Pie for a luscious dessert alternative.
• Salted Caramel Cupcakes if you crave sweet-salty goodness.
• Jimmy Carter’s Grandmother’s Peanut Butter Cookies for a nutty, nostalgic treat.
• Strawberry Shortcake Cheesecake Rolls that feel like summer wrapped in a bite.

---

Save This Pin For Later

Save this delicious idea to your favorite Pinterest board so it’s easy to find when you’re ready to whip it up again.

Tried it with a twist? Maybe added a touch of nutmeg or a swirl of chocolate? Share your muffin experiments in the comments—I’d love to hear how it turned out!

Need more inspiration? Explore my daily kitchen creations on SavorQueen Recipes on Pinterest. Your next favorite might be waiting there.

---

Print

Save this recipe on: